Molecular and Systems Oncology Group

Dr Paul Huang’s group aims to understand how networks of signalling-proteins control tumour progression and drug resistance in cancer.

Our group seeks to understand the underlying reasons as to why tumours go on to develop resistance and find new ways to effectively treat patients who relapse as a result of acquired drug resistance.

Professor Paul Huang

Group Leader:

Molecular and Systems Oncology Dr Paul Huang

Professor Paul Huang uses systems biology and molecular pathology to study drug resistance in sarcomas and lung cancer. He trained at Imperial College London and Massachusetts Institute of Technology, and was awarded a Sir Henry Wellcome Fellowship in 2009 and a Cancer Research UK Career Establishment Award in 2015.

Researchers in this group

Yeasmin .

Phone: +44 20 3437 6659

Email: [email protected]

Location: Sutton

I am a higher scientific officer. My work involves Nanostring gene expression analysis to establish molecular signatures or biomarkers for targeted therapy response in sarcoma trials.

Sara Arfan .

Email: [email protected]

Location: Sutton

I am PhD student focusing on understanding angiosarcomas. My work involves molecular profiling of angiosarcoma patient samples to better understand mechanisms of treatment response and resistance and identify potential biomarkers.

Amani Arthur .

Email: [email protected]

Location: Sutton

I am currently working on utilising radiogenomics to understand heterogeneity and therapy response in soft tissue sarcoma, and whether combining imaging and molecular data can improve patient outcomes.

Silvia Brusco .

Email: [email protected]

Location: Sutton

I'm a PhD student from Turin, Italy, and my project focuses on leiomyosarcoma, an aggressive soft tissue sarcoma subtype. My aim is to use RNA sequencing and proteomics to understand evolution of localised to metastatic disease with the goal of identifying new therapies for patients.

Avirup .

Phone: +44 20 3437 6680

Email: [email protected]

Location: Sutton

My research aims to identify candidate biomarkers for improving neoadjuvant therapy in high-risk soft tissue sarcomas. This convergence science project uses an explant-in-chip model developed by the Overby group, our collaborators at Imperial College London.

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Phone: +44 20 3437 7054

Email: [email protected]

Location: Sutton

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Phone: +44 20 3437 6020

Email: [email protected]

Location: Sutton

Matt Guelbert .

Email: [email protected]

Location: Sutton

I'm a first year PhD student. My research is interested in developing spatial proteomic sampling techniques to better understand intratumoral heterogeneity within soft tissue sarcomas.

Jingqi .

Email: [email protected]

Location: Sutton

I am a PhD student co-supervised by Dr Sam Au at Imperial College London. My project is on developing a microfluidic chip to study how extracellular matrix components affect tumour cell behaviour during metastatic colonisation in the lung, with a focus on using hydrogels to mimic the tumour microenvironment.

Dr Andrew Jenks .

Email: [email protected]

Location: Sutton

I began my postdoctoral career at the ICR in 2015. Initially working for the Signal Transduction Team (Barbara Tanos) and subsequently joining the Molecular and Systems Oncology Team in 2018. My current research is focused on understanding sub-clonal interactions and tumour heterogeneity driving EGFR inhibitor resistance in lung cancer.

Head shot of Pooja Kaur .

Email: [email protected]

Location: Sutton

I am a first-year PhD student split between Imperial College London (Ishihara lab) and the Institute of Cancer Research (Huang lab). My research will be focused on the bioengineering and development of immunomodulatory agents designed to target the extracellular matrix as a novel therapeutic strategy to treat sarcoma.

Kaan Low .

Phone: +44 20 3437 6918

Email: [email protected]

Location: Sutton

I am a Higher Scientific Officer currently investigating the drug resistance mechanisms in lung cancer patients with EGFR Exon20 insertion mutations using gene editing approaches such as CRISPR-Cas9.

Valeriya .

Phone: +44 20 7153 5082

Email: [email protected]

Location: Sutton

I’m Valeriya, a post doctoral researcher. I’m analysing matrisome and adhesome of leiomyosarcoma and using leiomyosarcoma-specific models of extracellular matrix to identify the drives of metastasis, in search for new drug targets.

Yuen Bun Tam .

Email: [email protected]

Location: Sutton

I am a PhD student working to understand the mechanisms of response and resistance in alveolar soft part sarcoma to the TKI cediranib, with the aims of identifying new biomarkers and therapeutic strategies to improve patient outcome.

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Phone: +44 20 3437 3609

Email: [email protected]

Location: Sutton

Professor Paul Huang's group have written 132 publications

Most recent new publication 8/2024

See all their publications

Sarcoma

Soft tissue sarcomas (STS) are a group of rare cancers that originate from supporting and connective tissue such as fat, muscle and blood vessels. This is a complex and highly diverse group of tumours that consists of more than 70 different types and can be found anywhere in the body. This complexity makes it challenging to effectively treat these cancers and outcomes for patients with advanced disease remain very poor.

Working closely with The Royal Marsden Sarcoma Unit (led by Dr Robin Jones), one of the largest specialist sarcoma treatment centres in Europe, the laboratory is currently focused on the following projects:

  • Proteomic profiling of STS in large retrospective series, clinical trials of targeted agents and rare sarcoma entities. We also lead on the proteomic analysis of sarcoma cases from the 100,000 Genomes Project as part of the Sarcoma Genomic England Clinical interpretation Partnership (GeCIP).
  • Resistance to targeted therapies including investigating clinical and preclinical mechanisms of drug resistance to kinase inhibitors such as pazopanib, regorafenib and cediranib, with a view to developing strategies to overcome resistance and achieve durable drug responses in patients.
  • Patient-derived model development for drug screening and mechanistic studies of therapy resistance in STS with a focus on developing models for common and rare sarcoma entities, lung metastasis and paired pre- and post-treatment tumours.
  • Prognostic and predictive biomarkers for patient stratification and early detection to deliver targeted therapy to patients likely to receive benefit while sparing those unlikely to respond to treatment from unnecessary side effects.

Lung cancer

Lung cancer is the largest cancer killer worldwide and contributes to 20% of all cancer deaths. Targeted therapies are routinely used for selected molecular subtypes of lung cancer such as those driven by mutant EGFR and ALK fusions.

However, tumours can find ways to overcome the effects of these drugs and rapidly acquire resistance leading to inevitable relapse in all patients within a year of treatment.

Our research in lung cancer focuses on understanding how tumours evolve to acquire drug resistance and develop strategies to tackle resistance to achieve lasting drug responses in patients.

Current project include:

  • Signalling mechanisms of resistance to EGFR inhibitors. Funded by Cancer Research UK, we are using molecular and chemical profiling strategies to identify mechanisms of intrinsic and acquired resistance to EGFR inhibitors including uncovering new signalling dependencies in mutant EGFR-driven lung cancers.
  • Intratumoural heterogeneity and subclonal interactions. We are exploiting proteomics and phosphoproteomics to investigate the signalling pathways driving subclonal interactions and tumour evolution in response to targeted therapy. Unpicking these signalling mechanisms may aid in the development of new salvage therapies for patients who develop acquired drug resistance.
  • Characterising exceptional response to targeted therapy. A small number of individuals, known as “exceptional responders”, show remarkable sensitivity and durable response to cancer treatment. We study and model such exceptional response in the laboratory to uncover mechanisms that confer long-term sensitivity to targeted agents.


Developing resistance to cancer drugs remains one of the biggest contributors to cancer deaths worldwide. Solving this problem will bring us one step closer to improving cure rates in patients.

The Molecular and Systems Oncology Group seeks to understand the underlying reasons as to why tumours go on to develop resistance and find new ways to effectively treat patients who relapse as a result of acquired drug resistance.

In doing so, we also aim to discover more accurate methods to stratify and predict which patients are likely to receive long-term benefit from therapy as a first step towards the development of companion diagnostics.

To address this problem, our laboratory concentrates on two interrelated areas of precision cancer medicine: (1) targeted therapy and drug resistance and (2) translational proteomics.

Focusing on sarcomas and lung cancers, two cancer types with particularly poor patient outcomes, we have a track record in the successful use of next generation proteomic profiling to deliver new strategies for combating drug resistance and identifying robust predictive and prognostic biomarkers.

Working in partnership with our clinical collaborators at the The Royal Marsden NHS Foundation Trust and other oncology centres worldwide, we lead on translational studies for several clinical trials of novel drug agents in sarcomas and lung cancer.

Our ultimate goal is to deliver an individualised approach to treatment and improve the long-term outcomes in sarcoma and lung cancer patients who currently have a poor prognosis.

Recent discoveries from this group

23/09/24

Histopathology image of leiomyosarcoma

Image: Leiomyosarcoma. Credit: Wikimedia Commons.

A new study has answered the long-standing question of why improvements in survival outcomes for young people with cancerous soft tissue tumours have lagged behind those of their paediatric and older adult counterparts. By analysing the protein profiles across different types of soft tissue tumours, known as sarcomas, researchers have shown that there are distinct biological differences between these age groups.

Furthermore, the team has identified a potential biomarker that could help predict which adolescent and young adult (AYA) patients are likely to have aggressive forms of sarcoma that will spread to other areas of the body. In the future, this may help guide treatment decisions for people of this age, improving outcomes for patients predicted to need more intensive treatment and sparing those with less aggressive cancer from the side effects of overtreatment.

Researchers at The Institute of Cancer Research, London, led the study, which has been published in the journal Communications Medicine. The work was funded by various grants and charitable donations, with funders including the Sarah Burkeman Trust, Cancer Research UK, and the Children's Cancer and Leukaemia Group partnered with the Little Princess Trust.

Age affects outlook for people with soft tissue tumours

Soft tissue tumours develop in the connective and supporting tissues of the body, such as muscle and fat. They are relatively rare but can affect people of any age. Those that are malignant, or cancerous, are called sarcomas.

Despite the incidence of sarcoma being higher among the AYA age group than among older adults (representing 8 per cent of cancer diagnoses vs. just 1 per cent), improvements in survival rates in the AYA age group, defined as people aged 16 to 39 at the time of diagnosis, have not kept pace with those for patients belonging to other age groups.

The study authors note that there are multiple reasons for this disparity, including inadequate age-specific services and under-representation of people in the AYA age group in clinical trials. These factors mean that the current treatments are optimised for older adults – those aged 40 and older – and do not always work effectively for AYA patients.

Believing that biological differences between the age groups must play a part in these inconsistent outcomes, the researchers set out to retrospectively analyse the features of the sets of proteins expressed in patients of different ages. They used data from 309 people with soft tissue sarcomas or benign soft tissue tumours, known as desmoid tumours. Nine sarcoma types were represented across the cohort, including angiosarcoma, clear cell sarcoma and leiomyosarcoma.

Identifying a new way to predict cancer spread

The researchers identified a total of 8,148 proteins across all the patient samples and quantified 3,299 of them. They found that 32 of the proteins were more abundant in the AYA patients than in the older adults, while 35 were more abundant in the older adults. Once the researchers had adjusted the results to account for other variables, including tumour size, anatomical site and sarcoma subtype, five of these proteins remained significant.

Overall, the older patients had higher levels of a protein involved in regulating the cell cycle while the proteins that were more abundant in the AYA patients have a role in structural support and the function of mitochondria, which generate energy for cells.

These differences could affect how sarcomas respond to treatment, which will, in turn, influence people’s likelihood of survival.

In the next part of the study, the team wanted to determine whether there was a correlation between any biological factors and the survival rates of the participants. The analysis showed that high expression of specific subunits of the cellular machinery responsible for splicing – an important step in the process of protein synthesis – were associated with better metastasis-free survival (MFS). MFS is the time from the start of treatment until the cancer begins to spread.

This splicing “signature” could potentially be used by clinicians to identify the AYA patients most likely to need intensive treatment to prevent their cancer from spreading.

“This could lead to substantial improvements in survivorship”

First author Yuen Bun Tam, a PhD student in the Molecular and Systems Oncology Group at the ICR, said:

“The lack of therapies tailored to adolescent and young adult patients is a key barrier to improving survival rates in this age group, representing a significant unmet need. In this study, we not only characterised the biological differences between young people and older adult patients but also identified an age-specific signature that may serve as a risk stratification tool in the clinical setting.

“By demonstrating the importance of age-specific studies in the discovery of more tailored strategies, such as targeted agents, we hope that our findings will encourage future studies and clinical trials to include more adolescents and young adults. In the long term, this could lead to substantial improvements in survivorship and the management of late effects for this age group.”

Senior author Dr Paul Huang, Leader of the Molecular and Systems Oncology Group at the ICR, said:

“Although we predicted that there would be inherent biological differences between the tumours in the two patient groups, we were surprised to see that many of these findings were independent of other clinical factors that differed between the two age groups, including the type of sarcoma.

“We are planning further work to validate our findings in larger cohorts and to measure our splicing signature, with the hope of making it feasible to use as a clinical test. We will also work on better understanding the link between this splicing signature and the ability of the tumour to spread. This knowledge could aid the identification of new treatment options to manage soft tissue tumours in adolescents and young adults.”